aligning sequences


looking for basic help you guys must know like the back of your hand.

was given five sequences and was told to align them. some have 12bp some have 9. how would i go about aligning these, how do i know when to align homologous positions? is there a case where homologous nucleotides are aligned?

I have to compile a difference matrix to propose a phylogenetic tree.

plz help me

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